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JOURNALS // Diskretnyi Analiz i Issledovanie Operatsii // Archive

Diskretn. Anal. Issled. Oper., 2014 Volume 21, Issue 3, Pages 25–40 (Mi da773)

This article is cited in 3 papers

Analysis of discrete automaton models of gene networks with irregular structure using symbolic algorithms

A. A. Evdokimova, S. E. Kochemazovb, I. V. Otpushennikovb, A. A. Semenovb

a S. L. Sobolev Institute of Mathematics, SB RAS, 4 Acad. Koptyug Ave., 630090 Novosibirsk, Russia
b Institute for System Dynamics and Control Theory, SB RAS, 134 Lermontov St., 664033 Irkutsk, Russia

Abstract: We introduce and analyze discrete-automaton models of gene networks where weight functions of vertices take into account various forms of regulatory activity of agents. Within the model, we analyze a discrete mapping specified by a fragment of the gene network of E.coli. For this mapping, we found a number of fixed points using SAT-approach. Also we analyze mappings specified by random graphs generated according to Gilbert–Erdos–Renyi and Watts–Strogatz models. For these mappings, it was possible to find fixed points and cycles of length 2 and 3. This work can be considered as a review of our recent results regarding discrete models of gene networks and symbolic methods of analysis of their functioning. Ill. 6, tab. 2, bibliogr. 27.

Keywords: discrete function, discrete automaton model of gene networks, SAT.

UDC: 519.7

Received: 02.09.2013


 English version:
Journal of Applied and Industrial Mathematics, 2014, 8:3, 307–316


© Steklov Math. Inst. of RAS, 2024