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JOURNALS // Fundamentalnaya i Prikladnaya Matematika // Archive

Fundam. Prikl. Mat., 2015 Volume 20, Issue 3, Pages 33–46 (Mi fpm1651)

Analyzing the data bank of proteins' space structures (PDB): a geometrical approach

E. A. Vilkul, A. O. Ivanov, A. S. Mishchenko, Th. Yu. Popelenskii, A. A. Tuzhilin, K. V. Shaytan

Lomonosov Moscow State University

Abstract: A geometrical approach to the analysis of a data bank containing information on space structures of proteins is suggested. As a result of the analysis, several relationships concerning possible conformations are found, and also there is obtained a list of polypeptides whose structures differ essentially from typical concepts of the 3D-structure of proteins. Those deviations could indicate possible errors and gaps of the interpreting models in use, as well as some new unknown relations and rules.

UDC: 514.8+51-76+57.087


 English version:
Journal of Mathematical Sciences (New York), 2017, 225:4, 555–564

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