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JOURNALS // Pis'ma v Zhurnal Èksperimental'noi i Teoreticheskoi Fiziki // Archive

Pis'ma v Zh. Èksper. Teoret. Fiz., 2023 Volume 117, Issue 10, Pages 783–793 (Mi jetpl6949)

This article is cited in 2 papers

BIOPHYSICS

Density functional theory, molecular dynamics, and AlteQ studies of baimantuoluoamide A and baimantuoluoamide B to identify potential inhibitors of M$^{\text{pro}}$ proteins: a novel target for the treatment of SARS COVID-19

K. Gurushankarab, S. Ch. Jeyaseelancd, M. Grishinab, I. Siswantoe, R. Tiwarif, N. N. T. Puspaningsihe

a Department of Physics, Kalasalingam Academy of Research and Education, Krishnankoil, Tamilnadu, 626126 India
b Laboratory of Computational Modeling of Drugs, Higher Medical and Biological School, South Ural State University, Chelyabinsk, 454080 Russia
c Post Graduate & Research Department of Physics, N.M.S.S.V.N. College, Madurai, Tamilnadu, 625019 India
d Post Graduate Department of Physics, Mannar Thirumalai Naciker College, Madurai, Tamilnadu, 625004 India
e Universitas Airlangga, 60115 Surabaya, Indonesia
f Department of Physics, Coordinator Research and Development Cell, Dr CV Raman University, Kargi Kota, Bilaspur CG, 495113 India

Abstract: COVID-19 has resulted in epidemic conditions over the world. Despite efforts by scientists from all over the world to develop an effective vaccine against this virus, there is presently no recognized cure for COVID-19. The most succeed treatments for various ailments come from natural components found in medicinal plants, which are also crucial for the development of new medications. This study intends to understand the role of the baimantuoluoamide A and baimantuoluoamide B molecules in the treatment of Covid19. Initially, density functional theory (DFT) used to explore their electronic potentials along with the Becke3–Lee–Yang–Parr (B3LYP) 6-311 + $G(d,p)$ basis set. A number of characteristics, including the energy gap, hardness, local softness, electronegativity, and electrophilicity, have also been calculated to discuss the reactivity of molecules. Using natural bond orbital, the title compound's bioactive nature and stability were investigated. Further, both compounds potential inhibitors with main protease (M$^{\text{pro}}$) proteins, molecular dynamics simulations and AlteQ investigations also studied.

Received: 02.01.2023
Revised: 12.04.2023
Accepted: 13.04.2023

DOI: 10.31857/S1234567823100117


 English version:
Journal of Experimental and Theoretical Physics Letters, 2023, 117:10, 781–790


© Steklov Math. Inst. of RAS, 2024