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JOURNALS // Pis'ma v Zhurnal Èksperimental'noi i Teoreticheskoi Fiziki // Archive

Pis'ma v Zh. Èksper. Teoret. Fiz., 2007 Volume 86, Issue 4, Pages 311–316 (Mi jetpl839)

This article is cited in 4 papers

MISCELLANEOUS

Symmetries of Electrostatic Interaction between DNA Molecules

V. L. Goloa, E. I. Katsbc, Yu. S. Volkova

a M. V. Lomonosov Moscow State University, Faculty of Mechanics and Mathematics
b L. D. Landau Institute for Theoretical Physics, Russian Academy of Sciences
c Institut Laue-Langevin

Abstract: We study a model for pair interaction $U$ of DNA molecules generated by the discrete dipole moments of base-pairs and the charges of phosphate groups, and find noncommutative group of eighth order $\mathcal S$ of symmetries that leave $U$ invariant. We classify the minima using group $\mathcal S$ and employ numerical methods for finding them. The minima may correspond to several cholesteric phases, as well as phases formed by cross-like conformations of molecules at an angle close to $90^o$ , “snowflake phase”. The results depend on the effective charge $Q$ of the phosphate group which can be modified by the polycations or the ions of metals. The snowflake phase could exist for $Q$ above the threshold $Q_C$. Below $Q_C$ there could be several cholesteric phases. Close to $Q_C$ the snowflake phase could change into the cholesteric one at constant distance between adjacent molecules.

PACS: 87.15.-v

Received: 11.07.2007

Language: English


 English version:
Journal of Experimental and Theoretical Physics Letters, 2007, 86:4, 278–283

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