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JOURNALS // Journal of Siberian Federal University. Mathematics & Physics // Archive

J. Sib. Fed. Univ. Math. Phys., 2024 Volume 17, Issue 6, Pages 769–775 (Mi jsfu1209)

Magnetic particles as a carrier to select aptamer for survivin (BIRC5), a low molecular weight protein tumor marker

Nikita S. Panamareva, Anna V. Tyumentsevab, Vasilisa V. Krasitskayaa, Ludmila A. Franka

a Institute of Biophysics SB RAS, Federal Research Center KSC SB RA, Krasnoyarsk, Russian Federation
b Krasnoyarsk Scientific Center SB RAS, Krasnoyarsk, Russian Federation

Abstract: Magnetic iron oxide nanoparticles modified with aminosiloxane ($\gamma$-Fe$_2$O$_3$@SiO$_2$-NH$_2$) were used as a carrier to select DNA aptamers for a small protein tumor biomarker survivin (BIRC5, 16.5 kDa) from a randomized synthetic DNA library by the SELEX method. Survivin was covalently immobilized on the nanoparticles’ surface. The library enrichment was monitored by solid-phase bioluminescent immunoassay and the DNA melting method. The prospects are outlined for the use of the obtained nanoparticles for the effective selection of aptamers specific to a given target.

Keywords: DNA aptamers, survivin (BIRC5), magnetic nanoparticles.

UDC: 577.271.34; 538.955

Received: 10.08.2024
Received in revised form: 16.09.2024
Accepted: 24.10.2024

Language: English



© Steklov Math. Inst. of RAS, 2025