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JOURNALS // Matematicheskaya Biologiya i Bioinformatika // Archive

Mat. Biolog. Bioinform., 2013 Volume 8, Issue 2, Pages 502–512 (Mi mbb157)

This article is cited in 3 papers

Bioinformatics

Recognition of Latent Periodicity in DNA Sequences

M. B. Chaleya, V. A. Kutyrkinb

a Institute of Mathematical Problems of Biology, Russian Academy of Sciences, Pushchino, Moscow Region, 142290, Russia
b Moscow State Technical University n.a. N. E. Bauman, Moscow, 107005, Russia

Abstract: Based on spectral-statistical approach elaborated earlier, the direct methods for recognizing a new type of periodicity in DNA sequences — latent profile periodicity which expands on the notion of approximate tandem repeat — are proposed. Comparison of the proposed methods with the other approaches, taking into account only the indirect indicators of the latent periodicity existence in DNA sequence, was done.

Key words: approximate tandem repeat, latent profile periodicity, statistical analysis of textual structure of DNA sequence.

UDC: 577.2:519.23

Received 16.08.2013, Published 24.09.2013



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