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JOURNALS // Matematicheskaya Biologiya i Bioinformatika // Archive

Mat. Biolog. Bioinform., 2014 Volume 9, Issue 2, Pages 518–526 (Mi mbb190)

Mathematical Modeling

Estimating the Time of Crossing a High, Long and Arbitrary Bumpy Free Energy Barrier

A. V. Finkelstein

Institute of Protein Research, Russian Academy of Sciences, Pushchino, Moscow Region 142290, Russia

Abstract: This communication presents a simple but rather general analytical estimate of the characteristic time of crossing a long, high and arbitrary bumpy free energy barrier in a course of sequential chemical, biochemical or physical reaction.

Key words: free energy of the barrier, time of crossing the barrier, polymerization, one-dimensional diffusion, quasistationary approximation, generalized quasistationary approximation, secondary structure formation, population of intermediate states.

UDC: 544.4, 577.3

Received 31.10.2014, Published 18.12.2014



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