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JOURNALS // Matematicheskaya Biologiya i Bioinformatika // Archive

Mat. Biolog. Bioinform., 2009 Volume 4, Issue 1, Pages 36–45 (Mi mbb42)

This article is cited in 5 papers

Mathematical Modeling

Construction of extended dynamical contact maps by molecular-dynamics simulation data

I. V. Likhachev, N. K. Balabaev

Institute of Mathematical Problems of Biology, Russian Academy of Sciences

Abstract: The article describes algorithms for the construction of extended dynamical contact maps and the tape of contacts for the analyzing of dynamical molecular systems. This analyzis is based on TAMD program – Trajectory Analyzer of Molecular Dynamics.

Key words: contact maps, analysis of molecular dynamics trajectory, molecular dynamics, analysis of protein structure contacts.

UDC: 577.32



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