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JOURNALS // Matematicheskaya Biologiya i Bioinformatika // Archive

Mat. Biolog. Bioinform., 2020 Volume 15, Issue 2, Pages 172–179 (Mi mbb430)

This article is cited in 1 paper

Mathematical Modeling

The reaction path of product release in NO detoxification at the active site of truncated hemoglobin N in MCSCF approach

K. V. Simon, A. V. Tulub

Saint Petersburg State University

Abstract: The Multi-Configurational Self-Consistent Field approach with the geometry optimization was applied to the calculation of electronic properties of active site of heme core of truncated hemoglobin N, with the inclusion of [ONOO] functional group and two water molecules. The localized molecular orbitals are employed as a starting set. Two subspaces of full interaction have been used by the construction of MCSCF wavefunction. The first one includes 3d-orbitals of iron atom, and the second contains bonding and antibonding molecular orbitals of peroxynitrite with one unshared electronic pair of the O$_2$ fragment. The reaction is characterized by two transition states; the products are nitrate anion NO$_3^-$ and one unbound water molecule. There arise an evidence of NO$_2$ and NO radicals as the reaction products.

Key words: tubercle bacillus, heme active center, peroxynitrite structure, MCSCF approach, transition states, reaction path, O$_2$/NO chemistry.

Received 19.06.2020, 19.07.2020, Published 03.10.2020

Language: English

DOI: 10.17537/2020.15.172



© Steklov Math. Inst. of RAS, 2024