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JOURNALS // Numerical methods and programming // Archive

Num. Meth. Prog., 2013 Volume 14, Issue 3, Pages 292–294 (Mi vmp115)

This article is cited in 1 paper

Вычислительные методы и приложения

Virtual dimensions in the docking method based on tensor train decompositions

D. A. Zheltkova, E. E. Tyrtyshnikovb

a M. V. Lomonosov Moscow State University, Faculty of Computational Mathematics and Cybernetics
b Institute of Numerical Mathematics, Russian Academy of Sciences, Moscow

Abstract: A modification of the docking method based on tensor train decompositions using the idea of virtual dimensions adding is proposed to find the position of the energy global minimum for the ligand-protein system. The proposed method is compared with the TTDock (docking based on tensor train decompositions) program, which uses only physical dimensions. According to the testing results, the modified method is 5–10 times faster with the same level of reliability.

Keywords: tensor train decomposition; virtual dimensions; cross interpolation method; global optimization; docking; computer drug design.

UDC: 519.6

Received: 15.04.2013



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