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JOURNALS // Numerical methods and programming // Archive

Num. Meth. Prog., 2006 Volume 7, Issue 4, Pages 310–322 (Mi vmp607)

Вычислительные методы и приложения

Entropic sampling of freely-rotating polymer chains

A. A. Yurchenko, P. N. Vorontsov-Velyaminov

Saint Petersburg State University

Abstract: In this paper we discuss some simulation results of freely-rotating models for polymer chains. Computer modeling was carried out by Monte Carlo methods within the Wang-Landau algorithm. For models of n-alkanes and polypeptides (polyglycines), distribution energy functions were obtained. They allowed us to calculate canonical values of internal energy, heat capacity and excess entropy, average radius of inertia, and end-to-end distance. For n-alkanes we used parameters of the OPLS force field, whereas for polyglycines we used parameters of the CHARMM force field.

Keywords: Monte-Carlo methods, simulation, Wang-Landau algorithm, polymers, polypeptides, thermodynamics, force field.

UDC: 537.213



© Steklov Math. Inst. of RAS, 2024