RUS  ENG
Full version
JOURNALS // Matematicheskaya Biologiya i Bioinformatika // Archive

2014, Volume 9, Issue 2


Information and Computer Technologies in Biology and Medicine
Approaches to Development of Common Information Resource on Species Biodiversity
N. V. Ivanova, M. P. Shashkov
396

Bioinformatics
Virtual Screening of Novel Hiv-1 Entry Inhibitors Blocking Cd4-Binding Site of the Virus Envelope Gp120 Protein
I. A. Kashyn, A. V. Tuzikov, A. M. Andrianov
359
Disclosure the Relationship ”Structure Biology Activity” on the Basis of Conformational Analysis of the Brassinosteroid’s Stereoisomers by the Molecular Modeling Methods
V. M. Andrianov, I. V. Anishchenko
386
Regularities Related to Introns Lengths Distribution
T. V. Astakhova, M. A. Roytberg, I. I. Tsitovich, V. V. Yakovlev
482
Identification of Gene Markers for Aggressive Forms of Low-Grade Glioma Using TCGA Expression Data
N. V. Ivanisenko, N. V. Gubanova, N. A. Kolchanov, V. A. Ivanisenko
527
Promoter Islands in the Genome of E. coli: Comparative Analysis against AT-Rich Sequences
O. A. Glazunova, S. S. Kiselev, K. S. Shavkunov, A. A. Bykov, V. V. Panyukov, O. N. Ozoline
563

Mathematical Modeling
Thermo-Electrical Analogy of Skin Properties and Low-Pass Filter, Correlation between Skin Temperature and Blood Flow Oscillations in Extremities
A. A. Sagaidachnyi, D. A. Usanov, A. V. Skripal, A. V. Fomin
309
Modeling of Eutrophic Lake Taking into Account the Data Uncertainty
E. V. Pacht
319
Role of elasticity of blood vessels in formation of highly amplitude oscillations of a blood flow with frequency of 0.1 Hz
A. A. Grinevich, A. V. Tankanag, N. K. Chemeris
341
Molecular Mechanisms of Caffeine Biological Effects. Computer Simulation of Competition with Adenosine for Binding Sites of Receptors
A. S. Deriabina, E. Rodriguez, E. Gonzalez, M. S. Deryabin, J. N. Herrera, C. Sanchez, V. I. Poltev
373
Changing the Dynamic Modes in Populations with Short Life Cycle: Mathematical Modeling and Simulation
E. Ya. Frisman, G. P. Neverova, M. P. Kulakov, O. A. Zhigalskii
414
Continuum Model of the One-Dimensional Holstein Bipolaron in DNA
N. I. Kashirina, V. D. Lakhno
430
An Individual-Based Model to Simulate Genetic Processes in Populations of Species Inhabiting One-Dimensional Area
Yu. S. Bukin, A. L. Gorbylev
438
Computer Simulation of Self-Organization in the Bacterial MinCDE System
A. A. Vitvitsky
453
Usage of Parallel Algorithms Based on CUDA Technology for Realisation of Reaction-Diffusion Models of Two-Dimensional Cellular Ensemble
A. V. Penenko, T. S. Troeglazova, U. S. Zubairova, D. Zh. Bayshibaev, S. N. Nikolaev
491
Modeling of Regulatory Mechanisms for mESC Self-Renewal: Kinetic and Stochastic Approaches
I. R. Akberdin, N. V. Ivanisenko, F. V. Kazantsev, E. A. Oschepkova, N. A. Omelyanchuk, Yu. G. Matushkin, D. A. Afonnikov
504
Estimating the Time of Crossing a High, Long and Arbitrary Bumpy Free Energy Barrier
A. V. Finkelstein
518
Modeling of Spatial Distribution of Knockout Effect for Genes Associated With Aggressiveness of Low Grade Glioma in Human Brain Tissues Using Machine Learning
E. D. Petrovskiy, N. A. Kolchanov, V. A. Ivanisenko
534
The Use of Connected Masks for Reconstructing the Single Particle Image from X-Ray Diffraction Data
V. Yu. Lunin, N. L. Lunina, T. E. Petrova
543
Conformational Analysis of Structural Motifs of $\alpha$-$\alpha$-Corner in the Computational Experiment of Molecular Dynamics
V. R. Rudnev, A. N. Pankratov, L. I. Kulikova, F. F. Dedus, D. A. Tikhonov, A. V. Efimov
575
HEC 2.0: improved simulation of the evolution of prokaryotic communities
S. A. Lashin, A. I. Klimenko, Z. S. Mustafin, N. A. Kolchanov, Yu. G. Matushkin
585

Data mining
New Methodology for the Analysis and Representation of Human Brain Function: MEGMRIAn
M. N. Ustinin, V. V. Sychev, K. D. Walton, R. R. Llinás
464

Comments
Matrix Model of the Steller’s Sea Eagle Population: Improvements and New Data
M. S. Romanov, V. B. Masterov
406


© Steklov Math. Inst. of RAS, 2026